mnp
- mnp package
- Subpackages
- mnp.evaluation package
- Submodules
EnvironmentalFactorTemplateHSITemplateLandTypeMapTemplatePopulationMapTemplateQgisLayerTemplateget_land_type_color()rand_web_color_hex()SubselectionEvaluationcreate_output()AssignedSpeciesMapBiggestBottleneckMapDetailedTableEnvironmentalBottleneckMapEnvironmentalFactorHotspotMapHotSpotsMapKeyPopulationsCountMapLandTypeMapQGisLayersRegionalContributionTableSubselectionMapSubselectionOutputSummaryTableTableadd_output_to_subselection()identify_land_types_per_species()make_bottleneck_map()
- Submodules
- mnp.preparation package
- Submodules
LandTypeMapaggregate_land_type_map()aggregate_row()read_aggregated_map()filter_incomplete_cells()csv_is_readable()directory_contains()is_directory()is_geospatial_raster()is_valid_csv()occurs_in_formula()path_exists()raster_has_resolution()rasters_have_identical_bounds()verify_local_distance()verify_parameters()ErrorMessageInputPathwayOutputPathwayVerificationProcedureVerifyEnvironmentalTableVerifyHSIFromDiskVerifyHasEnvironmentalFactorsVerifyIsGeospatialRasterAndResolutionVerifyLandTypeDirectoryVerifyMetadataCommentVerifyParametersVerifyRasterAndGeospatialProfileBoundsVerifyRasterBoundsVerifySpeciesSubselectionVerifySpeciesTraitsVerifyTableverify_user_input()read_rasters_from_cover()get_valid_species()get_valid_species_selections()melt_boolean_dataframe()SpeciesDataBasesave_spatial_mask()verify_spatial_data_coverage()
- Submodules
- mnp.species_models package
- Submodules
ClusterLocalClusteringClusteringProcedureEnvironmentalFactorHSIHSIProcedureNaturePreCalculatedPolygonHabitatMapRegionalSpeciesEvaluationSpeciesEvaluationSpeciesEvaluation.calculate()SpeciesEvaluation.evaluate_metapopulations()SpeciesEvaluation.population_array()SpeciesEvaluation.results()SpeciesEvaluation.summary_table_to_file()SpeciesEvaluation.trait_info()SpeciesEvaluation.update_results_dictionary()SpeciesEvaluation.update_viability_class()
SpeciesEvaluationParametersSubRegionSpeciesGeoMapSpeciesGeomapLoggerSpeciesModelSpeciesModel.evaluation_results()SpeciesModel.get_populations_array()SpeciesModel.log_messages()SpeciesModel.name_info()SpeciesModel.region_evaluation_results()SpeciesModel.run_clustering()SpeciesModel.run_evaluation()SpeciesModel.run_hsi()SpeciesModel.run_regional_evaluation()SpeciesModel.trait_info()
run_species()run_species_models()produce_nkeys_map()produce_nkeys_maps()
- Submodules
- mnp.evaluation package
- Submodules
bottleneck_analysis()evaluate_models()mnp()prepare_input()run_and_evaluate()save_config_and_log()MNPParametersMNPParameters.complying_speciesMNPParameters.configMNPParameters.environmental_factor_hotspot_statisticMNPParameters.environmental_response_tablesMNPParameters.foldersMNPParameters.force_species_model_recalculationMNPParameters.from_configparser()MNPParameters.geospatial_profileMNPParameters.get_complying_species()MNPParameters.get_valid_species_selections()MNPParameters.group_traitsMNPParameters.hsi_thresholdMNPParameters.land_type_suitabilitiesMNPParameters.pxl_areaMNPParameters.read_geospatial_profile()MNPParameters.region_namesMNPParameters.response_020MNPParameters.response_080MNPParameters.response_100MNPParameters.save_rastersMNPParameters.small_pop_slopeMNPParameters.small_pop_threshold_areaMNPParameters.species_namesMNPParameters.species_traitsMNPParameters.subselection_tablesMNPParameters.valid_species_subselections
CustomFormatterListadd_dynamics_to_config()clear_temp()config_info_to_temp()config_section_to_cover()copy_input_file()create_directories()geo_profile_from_hsi()get_logger()list_sources_destinations()log_file_to_cover()log_start_completed()slugify()
- Subpackages