mnp

• mnp package
  • Subpackages
    • mnp.evaluation package
      • Submodules
        • EnvironmentalFactorTemplate
        • HSITemplate
        • LandTypeMapTemplate
        • PopulationMapTemplate
        • QgisLayerTemplate
          • QgisLayerTemplate.find_replace()
          • QgisLayerTemplate.read_template_lines()
          • QgisLayerTemplate.write_to_file()
        • get_land_type_color()
        • rand_web_color_hex()
        • SubselectionEvaluation
        • create_output()
        • AssignedSpeciesMap
          • AssignedSpeciesMap.content
          • AssignedSpeciesMap.create()
          • AssignedSpeciesMap.to_file()
          • AssignedSpeciesMap.write_explanatory_table()
        • DetailedTable
          • DetailedTable.add_to_table_data()
          • DetailedTable.create()
        • HotSpotsMap
          • HotSpotsMap.content
          • HotSpotsMap.create()
          • HotSpotsMap.save_qml()
          • HotSpotsMap.to_file()
        • KeyPopulationsCountMap
          • KeyPopulationsCountMap.content
          • KeyPopulationsCountMap.create()
        • LandTypeMap
          • LandTypeMap.create()
          • LandTypeMap.save_qlr()
          • LandTypeMap.to_file()
        • QGisLayers
          • QGisLayers.create()
          • QGisLayers.to_file()
        • SubselectionMap
          • SubselectionMap.create()
          • SubselectionMap.to_file()
        • SubselectionOutput
          • SubselectionOutput.create()
          • SubselectionOutput.to_file()
        • SummaryTable
          • SummaryTable.create()
          • SummaryTable.name
        • Table
          • Table.create()
          • Table.to_file()
        • add_output_to_subselection()
        • identify_land_types_per_species()
    • mnp.preparation package
      • Submodules
        • LandTypeMap
          • LandTypeMap.aggregate()
          • LandTypeMap.aggregate_multiprocess()
          • LandTypeMap.make_geospatial_profile()
          • LandTypeMap.save()
          • LandTypeMap.save_geospatial_profile()
        • aggregate_land_type_map()
        • aggregate_row()
        • read_aggregated_map()
        • filter_incomplete_cells()
        • csv_is_readable()
        • directory_contains()
        • is_directory()
        • is_geospatial_raster()
        • is_valid_csv()
        • occurs_in_formula()
        • path_exists()
        • raster_has_resolution()
        • rasters_have_identical_bounds()
        • verify_local_distance()
        • verify_parameters()
        • ErrorMessage
        • InputPathway
          • InputPathway.identify()
          • InputPathway.log_messages()
          • InputPathway.verify()
        • OutputPathway
        • VerificationProcedure
          • VerificationProcedure.update_status()
        • VerifyEnvironmentalTable
        • VerifyHSIFromDisk
        • VerifyHasEnvironmentalFactors
        • VerifyIsGeospatialRasterAndResolution
        • VerifyLandTypeDirectory
        • VerifyMetadataComment
        • VerifyParameters
        • VerifyRasterAndGeospatialProfileBounds
        • VerifyRasterBounds
        • VerifySpeciesSubselection
        • VerifySpeciesTraits
        • VerifyTable
        • verify_user_input()
        • read_rasters_from_cover()
        • get_valid_species()
        • get_valid_species_selections()
        • melt_boolean_dataframe()
        • SpeciesDataBase
          • SpeciesDataBase.any2any()
          • SpeciesDataBase.is_species()
        • save_spatial_mask()
        • verify_spatial_data_coverage()
    • mnp.species_models package
      • Submodules
        • ClusterLocal
          • ClusterLocal.run()
        • Clustering
        • ClusteringProcedure
          • ClusteringProcedure.run()
        • EnvironmentalFactor
          • EnvironmentalFactor.calculate()
        • HSI
          • HSI.calculate()
          • HSI.save_environmental_factor_raster()
        • HSIProcedure
          • HSIProcedure.run()
        • Nature
          • Nature.run()
        • PreCalculated
          • PreCalculated.run()
        • SpeciesEvaluation
          • SpeciesEvaluation.calculate()
          • SpeciesEvaluation.evaluate_metapopulations()
          • SpeciesEvaluation.population_array()
          • SpeciesEvaluation.results()
          • SpeciesEvaluation.summary_table_to_file()
          • SpeciesEvaluation.trait_info()
          • SpeciesEvaluation.update_results_dictionary()
          • SpeciesEvaluation.update_viability_class()
        • SpeciesEvaluationParameters
          • SpeciesEvaluationParameters.key_population_area
          • SpeciesEvaluationParameters.possibly_viable_threshold
          • SpeciesEvaluationParameters.pxl_area
          • SpeciesEvaluationParameters.small_pop_slope
          • SpeciesEvaluationParameters.small_pop_threshold_area
          • SpeciesEvaluationParameters.viable_threshold
        • SpeciesGeoMap
          • SpeciesGeoMap.file_exists()
          • SpeciesGeoMap.read_from_file()
          • SpeciesGeoMap.save_raster()
        • SpeciesGeomapLogger
          • SpeciesGeomapLogger.error()
          • SpeciesGeomapLogger.info()
          • SpeciesGeomapLogger.warning()
        • SpeciesModel
          • SpeciesModel.evaluation_results()
          • SpeciesModel.get_populations_array()
          • SpeciesModel.log_messages()
          • SpeciesModel.name_info()
          • SpeciesModel.run_clustering()
          • SpeciesModel.run_evaluation()
          • SpeciesModel.run_hsi()
          • SpeciesModel.trait_info()
        • run_species()
        • run_species_models()
  • Submodules
    • evaluate_models()
    • mnp()
    • prepare_input()
    • run_and_evaluate()
    • save_config_and_log()
    • MNPParameters
      • MNPParameters.complying_species
      • MNPParameters.config
      • MNPParameters.environmental_factor_hotspot_statistic
      • MNPParameters.environmental_response_tables
      • MNPParameters.folders
      • MNPParameters.force_species_model_recalculation
      • MNPParameters.from_configparser()
      • MNPParameters.geospatial_profile
      • MNPParameters.get_complying_species()
      • MNPParameters.get_valid_species_selections()
      • MNPParameters.group_traits
      • MNPParameters.hsi_threshold
      • MNPParameters.land_type_suitabilities
      • MNPParameters.pxl_area
      • MNPParameters.read_geospatial_profile()
      • MNPParameters.response_020
      • MNPParameters.response_080
      • MNPParameters.response_100
      • MNPParameters.save_rasters
      • MNPParameters.small_pop_slope
      • MNPParameters.small_pop_threshold_area
      • MNPParameters.species_names
      • MNPParameters.species_traits
      • MNPParameters.subselection_tables
      • MNPParameters.valid_species_subselections
    • CustomFormatter
      • CustomFormatter.FORMATS
      • CustomFormatter.bold_red
      • CustomFormatter.cyan
      • CustomFormatter.format()
      • CustomFormatter.funcname
      • CustomFormatter.grey
      • CustomFormatter.levelname
      • CustomFormatter.message
      • CustomFormatter.red
      • CustomFormatter.reset
      • CustomFormatter.time
      • CustomFormatter.yellow
    • List
    • add_dynamics_to_config()
    • clear_temp()
    • config_info_to_temp()
    • config_section_to_cover()
    • copy_input_file()
    • create_directories()
    • geo_profile_from_hsi()
    • get_logger()
    • list_sources_destinations()
    • log_file_to_cover()
    • log_start_completed()
    • slugify()